For the most complete list, please visit Google Scholar.
Ann S. Blevins, Jason Z. Kim, Danielle S. Bassett, "Variability in higher order structure of noise added to weighted networks" arXiv:2101.03933v1 [q-bio.QM] Interactive supplement
Leo Torres, Ann S. Blevins, Danielle S. Bassett, Tina Eliassi-Rad, "The why, how, and when of representations for complex systems" Accepted to SIAM Review.
Blevins A.S., Bassett D.S. (2020) Topology in Biology. In: Sriraman B. (eds) Handbook of the Mathematics of the Arts and Sciences. Springer, Cham. https://doi.org/10.1007/978-3-319-70658-0_87-1
Blevins, Ann Sizemore, and Danielle S. Bassett. "Reorderability of node-filtered order complexes." Physical Review E 101.5 (2020): 052311.
Tanaz Sharifnia, Mathias Wawer, Ting Chen, Qing-Yuan Huang, Barbara A. Weir, Ann Sizemore, Matthew A. Lawlor, Amy Goodale, Glenn S. Cowley, Francisca Vazquez, Christopher J. Ott, Joshua M. Francis, Slim Sassi, Patricia Cogswell, Hadley E. Sheppardl Tinghu Zhang, Nathanael S. Gray, Paul A. Clarke, Julian Blagg, Paul Workman, Josh Sommer, Francis Hornicek, David E. Root, William C. Hahn, James E. Bradner, Kwok K. Wong, Paul A. Clemons, Charles Y. Lin, Joanne D. Kotz, and Stuart L. Schreiber “Small-molecule targeting of brachyury transcription factor addiction in chordoma.” Nature Medicine 25, no. 2 (2019): 292.
Sydney M. Shaffer, Benjamin L. Emert, Ann E. Sizemore, Rohit Gupte, Eduardo Torre, Danielle S. Bassett, Arjun Raj, "Memory sequencing reveals heritable single cell gene expression programs associated with distinct cellular behaviors." bioRxiv 379016; doi: https://doi.org/10.1101/379016 (submitted)
Ann E. Sizemore, Jennifer E. Phillips-Cremins, Robert Ghrist, Danielle S. Bassett, "The importance of the whole: topological data analysis for the network neuroscientist" arXiv:1806.05167 [q-bio.QM]
Ann E. Sizemore, Elisabeth A. Karuza, Chad Giusti, Danielle S. Bassett, "Knowledge gaps in the early growth of semantic networks" arXiv:1709.00133 [q-bio.NC] (submitted)
Robin M. Meyers, Jordan G. Bryan, James M. McFarland, Barbara A. Weir, Ann E. Sizemore, Han Xu, Neekesh V. Dharia, Phillip G. Montgomery, Glenn S. Cowley, Sasha Pantel, Amy Goodale, Yenarae Lee, Levi D. Ali, Guozhi Jiang, Rakela Lubonja, William F. Harrington, Matthew Strickland, Ting Wu, Derek C. Hawes, Victor A. Zhivich, Meghan R. Wyatt, Zohra Kalani, Jaime J. Chang, Michael Okamoto, Todd R. Golub, Jesse S. Boehm, Francisca Vazquez, David E. Root, William C. Hahn, Aviad Tsherniak, "Computational correction of copy-number effect improves specificity of CRISPR-CAS9 essentiality screens in cancer cells" Nature Genetics 49, no. 12 (2017): 1779.
Ankit N. Khambhati, Ann E. Sizemore, Richard F. Betzel, Danielle S. Bassett, "Modelling and Interpreting Network Dynamics" Neuroimage (2017).
Ann E. Sizemore and Danielle S. Bassett, "Dynamic Graph Metrics: Tutorial, Toolbox, and Tale" Neuroimage (2017).
Ann E. Sizemore, Chad Giusti, Richard F. Betzel, and Danielle S. Bassett, "Cliques and cavities in the human connectome." Journal of computational neuroscience 44, no. 1 (2018): 115-145.
Write-ups: MIT Technology Review, New Scientist Magazine, The Intrepid Mathematician
Ann E. Sizemore, Chad Giusti and Danielle S. Bassett, "Classification of weighted networks through mesoscale homological features." Journal of Complex Networks 5.2 (2016): 245-273.
Leo Torres, Ann S. Blevins, Danielle S. Bassett, Tina Eliassi-Rad, "The why, how, and when of representations for complex systems" Accepted to SIAM Review.
Blevins A.S., Bassett D.S. (2020) Topology in Biology. In: Sriraman B. (eds) Handbook of the Mathematics of the Arts and Sciences. Springer, Cham. https://doi.org/10.1007/978-3-319-70658-0_87-1
Blevins, Ann Sizemore, and Danielle S. Bassett. "Reorderability of node-filtered order complexes." Physical Review E 101.5 (2020): 052311.
Tanaz Sharifnia, Mathias Wawer, Ting Chen, Qing-Yuan Huang, Barbara A. Weir, Ann Sizemore, Matthew A. Lawlor, Amy Goodale, Glenn S. Cowley, Francisca Vazquez, Christopher J. Ott, Joshua M. Francis, Slim Sassi, Patricia Cogswell, Hadley E. Sheppardl Tinghu Zhang, Nathanael S. Gray, Paul A. Clarke, Julian Blagg, Paul Workman, Josh Sommer, Francis Hornicek, David E. Root, William C. Hahn, James E. Bradner, Kwok K. Wong, Paul A. Clemons, Charles Y. Lin, Joanne D. Kotz, and Stuart L. Schreiber “Small-molecule targeting of brachyury transcription factor addiction in chordoma.” Nature Medicine 25, no. 2 (2019): 292.
Sydney M. Shaffer, Benjamin L. Emert, Ann E. Sizemore, Rohit Gupte, Eduardo Torre, Danielle S. Bassett, Arjun Raj, "Memory sequencing reveals heritable single cell gene expression programs associated with distinct cellular behaviors." bioRxiv 379016; doi: https://doi.org/10.1101/379016 (submitted)
Ann E. Sizemore, Jennifer E. Phillips-Cremins, Robert Ghrist, Danielle S. Bassett, "The importance of the whole: topological data analysis for the network neuroscientist" arXiv:1806.05167 [q-bio.QM]
Ann E. Sizemore, Elisabeth A. Karuza, Chad Giusti, Danielle S. Bassett, "Knowledge gaps in the early growth of semantic networks" arXiv:1709.00133 [q-bio.NC] (submitted)
Robin M. Meyers, Jordan G. Bryan, James M. McFarland, Barbara A. Weir, Ann E. Sizemore, Han Xu, Neekesh V. Dharia, Phillip G. Montgomery, Glenn S. Cowley, Sasha Pantel, Amy Goodale, Yenarae Lee, Levi D. Ali, Guozhi Jiang, Rakela Lubonja, William F. Harrington, Matthew Strickland, Ting Wu, Derek C. Hawes, Victor A. Zhivich, Meghan R. Wyatt, Zohra Kalani, Jaime J. Chang, Michael Okamoto, Todd R. Golub, Jesse S. Boehm, Francisca Vazquez, David E. Root, William C. Hahn, Aviad Tsherniak, "Computational correction of copy-number effect improves specificity of CRISPR-CAS9 essentiality screens in cancer cells" Nature Genetics 49, no. 12 (2017): 1779.
Ankit N. Khambhati, Ann E. Sizemore, Richard F. Betzel, Danielle S. Bassett, "Modelling and Interpreting Network Dynamics" Neuroimage (2017).
Ann E. Sizemore and Danielle S. Bassett, "Dynamic Graph Metrics: Tutorial, Toolbox, and Tale" Neuroimage (2017).
Ann E. Sizemore, Chad Giusti, Richard F. Betzel, and Danielle S. Bassett, "Cliques and cavities in the human connectome." Journal of computational neuroscience 44, no. 1 (2018): 115-145.
Write-ups: MIT Technology Review, New Scientist Magazine, The Intrepid Mathematician
Ann E. Sizemore, Chad Giusti and Danielle S. Bassett, "Classification of weighted networks through mesoscale homological features." Journal of Complex Networks 5.2 (2016): 245-273.
